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Ncbi Entrez software
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Ncbi Entrez

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Released: January 05, 2013  |  Added: January 05, 2013 | Visits: 270

Cl!psci The CL!Psci Scientific Search Engine is a superfast and efficient, free Google-like software, designed to meet the specialized and intensive, web-based information need of the researcher scientist. * Customize a menu of your most commonly used scientific search engines * Right-click on a word or...



Platforms: Windows

License: Freeware Size: 1.53 MB Download (45): Cl!psci Download

Released: September 19, 2012  |  Added: September 19, 2012 | Visits: 247

Entrez Gene Parser in Perl Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.





Platforms: Windows, Mac, Linux

License: Freeware Size: 35.3 KB Download (28): Entrez Gene Parser in Perl Download

Added: May 10, 2013 | Visits: 306

Perl Entrez Gene Parser This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

License: Freeware Download (31): Perl Entrez Gene Parser Download

Added: January 25, 2010 | Visits: 574

Entrez Widget The Entrez Widget provides a quick access to the NCBI Databases. You just have to enter your search terms and the result will be displayed in a new browser window.


Platforms: Mac

License: Freeware Download (82): Entrez Widget Download

Released: November 22, 2012  |  Added: November 22, 2012 | Visits: 232

WinBlast WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST.


Platforms: Windows

License: Freeware Size: 1024 KB Download (61): WinBlast Download

Added: August 13, 2013 | Visits: 178

DNADynamo DNADynamo sequence analysis software is easy to use. It's user interface is focused on your DNA sequences, proteins and restriction enzyme sites. Sequencing data, oligonucleotide sequences, DNA/Protein annotations and notes can be added to each sequence. Information is accessible whenever it is...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 10.92 MB Download (16): DNADynamo Download

Added: August 19, 2008 | Visits: 3.259

Blast Viewer Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a...


Platforms: Windows

License: Freeware Size: 5 KB Download (257): Blast Viewer Download

Added: January 25, 2010 | Visits: 520

BLAST Widget The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

License: Freeware Download (97): BLAST Widget Download

Added: January 25, 2010 | Visits: 464

Translated BLAST Widget Translated BLAST Widget provides a quick access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

License: Freeware Download (71): Translated BLAST Widget Download

Added: January 25, 2010 | Visits: 618

Protein BLAST Widget Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

License: Freeware Download (80): Protein BLAST Widget Download

Added: January 25, 2010 | Visits: 647

Nucleotide BLAST Widget Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

License: Freeware Download (91): Nucleotide BLAST Widget Download

Released: June 10, 2012  |  Added: June 10, 2012 | Visits: 306

TB antibiotic resistance mapper TB antibiotic resistance mapper was developed as a specialized tool that can help you map sequencing reads with the MTB reference genome (H37Rv) using NCBI blast, in order to find out mutation sites. Now you can quickly discover mutations with the help of this instrument.


Platforms: Windows

License: Freeware Download (40): TB antibiotic resistance mapper Download

Released: June 13, 2012  |  Added: June 13, 2012 | Visits: 290

EST Express EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.


Platforms: Windows, Mac, Linux

License: Freeware Size: 27.32 MB Download (28): EST Express Download

Released: October 26, 2012  |  Added: October 26, 2012 | Visits: 247

jamblast JAMBLAST: Java Application Manager for the ncbi BLAST results. It is a graphic application that allow the user to display, filter, sort, import/export, store/manage BLAST results produced with the NOBLAST (https://sourceforge.net/projects/noblast).


Platforms: Windows, Mac, Linux

License: Freeware Size: 4.29 MB Download (27): jamblast Download

Released: November 27, 2012  |  Added: November 27, 2012 | Visits: 172

NCBI Viewer This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 10.56 KB Download (27): NCBI Viewer Download

Released: December 11, 2012  |  Added: December 11, 2012 | Visits: 265

ORFprimer - primer design for ORFs ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences


Platforms: Windows, Mac, BSD, Solaris, Linux

License: Freeware Size: 240.93 KB Download (28): ORFprimer - primer design for ORFs Download

Added: March 24, 2013 | Visits: 252

MGWT MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....


Platforms: Matlab

License: Freeware Size: 51.2 KB Download (21): MGWT Download

Added: September 12, 2013 | Visits: 202

Pubmed Integration As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of...


Platforms: PHP

License: Freeware Size: 20.48 KB Download (19): Pubmed Integration Download

Added: September 19, 2013 | Visits: 178

PHLAWD PHLAWD (pronounced flawd) allows for the creation of large (mega) phylogenies using NCBI databases. There are binaries available for Linux and MacOSX in the downloads section. PHLAWD takes advantage (or at least part of it) of multi threaded computers and can produce matrices of more than 100,000...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 11.75 MB Download (16): PHLAWD Download

Added: July 20, 2013 | Visits: 181

Sequin Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank sequence database. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissions containing long sequences, multiple annotations, gapped...


Platforms: Mac

License: Freeware Size: 63.48 MB Download (16): Sequin Download

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